PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g41540.1.p
Common NameBRADI_2g41540, LOC100840621
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 686aa    MW: 72965 Da    PI: 5.2203
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g41540.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.9e-06458480225
                       -S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                       k ++C +far G C  Gd C++ H
  Bradi2g41540.1.p 458 KSKPCTHFAR-GSCLKGDDCPYDH 480
                       6789******.************* PP

2zf-CCCH20.31e-06486507526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C++f+ +G C +Gd+CkF+H+
  Bradi2g41540.1.p 486 PCHNFLGNGMCLRGDKCKFSHV 507
                       7********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.709427454IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-5428452IPR000571Zinc finger, CCCH-type
SMARTSM003560.51428453IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4455481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.281456483IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5456482IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5458481IPR000571Zinc finger, CCCH-type
SMARTSM003560.28484508IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6485512IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295486509IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MENALAPAAP ADPLAAGSAA PTTLLLSRRR SHLDSASYRT LSRLFSHFLH LNPSQHAAPA  60
HLGIEPAAAN PIGDASPQGA SAAPKDAEFE QGKDIEEQVA AASTSGVETP AHVVVEAAAG  120
YPIADLDMAS QESAGHEVAG VELVEGLEDM VAEGIACRKT PALVEELGGE AELMGTDEVL  180
RSMEASLEGE IEESAELAVA NDDEHLLLDT MMSKLSGLIG DASGGTMSMQ NCGVSRGEPQ  240
NHGKIAEGVK EFVYGIEEST PVGNSDHQSV DGGGFEEGEI EGDMQTLDAD ESGDSELEAA  300
DDEKLEEDFA TRGSGENESS DHGIRCLNSL SMLGIKGSGD LVLNKEGDIK ADAQMHVPRA  360
QAVGYDEVVE WNETPLHDAE APRPGKRKRI FTEERKAKKT KNKRVKRALQ READGVKRLK  420
LAPIIKPKVV RYCHFYLHGK CQQGNVCKFS HDTTPLTKSK PCTHFARGSC LKGDDCPYDH  480
ELSKYPCHNF LGNGMCLRGD KCKFSHVAPT ADDSSTKDAK KSDASLVSEK LTSKEQNSSQ  540
KISTVHDGEP VASAPTKHYS ILKTLGSISK NAQKASAHMP KGVQFLAFSK GRSDSSILHQ  600
DAPPPGNFVG PQAAEGDKNA QPNRHRSAAR SNENSSKEAS SHPISEQKKT SLSADSIAVL  660
GSVSTQHEVS EASRILQEFL FGAGN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231935.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
RefseqXP_010231934.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
RefseqXP_003569232.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLI1HNR50.0I1HNR5_BRADI; Uncharacterized protein
STRINGBRADI2G41540.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Representative plantOGRP81611212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.24e-06C3H family protein